
Amputation of Flagella from Chlamydomonas
To study microtubule assembly in Chlamydomonas, we
need a reliable method to amputate flagella without
damaging the cells, allowing the cell membranes
to reseal and flagella to reassemble. We have tried
two methods to remove flagella from Chlamydomonas,
and present the results here. Your experiment will
use one or the other method, so for the materials
and methods you need to know which was used.
We purchase all of our chemicals from the Sigma
Chemical Co., St. Louis, Mo., spring
water and cultures of Chlamydomonas reinhardii from
the Carolina Biological Supply Co., Burlington,
NC., and basic culture solution from Ward's, Rochester
NY. We grow motile Chlamydomonas by
inoculating spring water in a shallow glass container
with an active culture, then placing the container
in a bright window. We sometimes have difficulty
obtaining cells that are mostly motile, but unless
you hear otherwise you can assume that we achieved
nearly 100% motility. Motility will be confirmed
just before the lab starts by examination of a
drop of culture in a depression slide using dark
field at 100x.
Deflagellation by pH shock
When we use the pH shock method we use a magnetic
stirrer to stir about 100 ml culture vigorously
while monitoring the pH. We add 0.5M acetic acid
dropwise to reduce the pH to <4.5, doing so
within 30 sec. After another 30 sec. we add 0.5M
KOH dropwise, to restore the pH to near 6.8. After
distributing the suspension into six 15 ml disposable
capped conical centrifuge tubes we centrifuge at
high speed (500 x g) in an International Model
HN tabletop centrifuge for 3 min, resuspending
and combining the pellets in spring water to a
concentration 2.5x the original concentration of
cells. Note that all of the deflagellated cells
are prepared in one batch, with volumes of the
suspension separated out after deflagellation in
order to make different treatment groups.
Results
When we first tried it, success with the pH shock
method varied widely from one preparation to the
next. The most frequent result was persistent motility
– many of
the cells failed to shed flagella at all. Near
100% amputation was obtained by prolonging
the time at which the cultures were kept at pH
4.5, however those preparations often failed to
regenerate flagella. Success has been vastly improved
by growing cells in 10% Ward's
basic culture solution in spring water, with pH
adjusted to 7 if necessary.
Mechanical deflagellation
To remove flagella by shearing them off, we use
a Janke & Kunkel Ultra-Turrax (Polytron type) tissue
disruptor homogenizer with 20-mm shaft (Tekmar,
Cincinnati, Oh).
This type homogenizer was designed to rapidly disrupt
suspensions of minced solid tissue.
A rotor inside a hollow stainless steel shaft
rotates at high speed, sucking tissue through openings
in the end of the shaft. Tissue is then "whacked" by
the rotor and sheared. Minced tissue is homogenized
quickly this way, fragmenting the cells.
Single cells in suspension typically slip through
the gap between rotor and shaft and are unharmed,
however flagella are quite fragile. The end of
the shaft is barely submerged when touching bottom
when we use one hundred ml of culture in a 250
ml beaker, maximizing efficiency of the treatment.
Eight treatments at a setting of '70' for 15 sec.
at at one minute intervals usually shears most
of the flagella to a length of less than one µm.
We then centrifuge and resuspend as described for
the pH shock method.
Results
Mechanical deflagellation typically results in
amputation of flagella from 95% of cells, with
partial amputations among the remainder. Eighty
percent or more of the cells typically regenerate
flagella, although a significant percentage consistently
do not. Following a lag period of 10 to 20 min.
flagella usually elongate rapidly to 90% of full
length within an hour.
Even with mechanical deflagellation we encounter
failures. We need very healthy cultures and very
clean spring water. A failure to regenerate flagella
among a majority of cells is the most common problem.

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