Most of the detail of living cells is undetectable
in bright field microscopy because there is too
little contrast between structures with similar
transparency and there is insufficient natural
pigmentation. However
the various organelles show wide variation in refractive
index, that is, the tendency of the materials to
bend light, providing an opportunity to distinguish
them.
Principle
Highly refractive structures bend light to a
much greater angle than do structures of low
refractive index. The same properties that cause
the light to bend also delay the passage of light
by a quarter of a wavelength or so. In a light
microscope in bright field mode, light from highly
refractive structures bends farther away from
the center of the lens than light from less refractive
structures and arrives about a quarter of a wavelength
out of phase.
Light from most objects passes through the center
of the lens as well as to the periphery. Now
if the light from an object to the edges of the
objective lens is retarded a half wavelength
and the light to the center is not retarded at
all, then the light rays are out of phase by
a half wavelength. They cancel each other when
the objective lens brings the image into focus.
A reduction in brightness of the object is observed.
The degree of reduction in brightness depends
on the refractive index of the object.
Applications for phase contrast microscopy
Phase contrast is preferable to bright field
microscopy when high magnifications (400x, 1000x)
are needed and the specimen is colorless or the
details so fine that color does not show up well.
Cilia and flagella, for example, are nearly invisible
in bright field but show up in sharp contrast
in phase contrast. Amoebae look like vague outlines
in bright field, but show a great deal of detail
in phase. Most living microscopic organisms are
much more obvious in phase contrast.

Figure. (a) organelles are nearly
invisible in bright field although they have
different refractive indexes; (b) light is bent
and retarded more by objects with a high refractive
index; (c) in phase contrast a phase plate is
placed in the light path. Barely refracted light
passes through the center of the plate and is
not retarded. Highly refracted light passes through
the plate farther from center and is held back
another one quarter wavelength.; (d) The microscope
field shows a darker background (in this case
the cell cytoplasm has a higher refractive index
than the contractile vacuole), with the organelles
in sharp contrast.
Using phase contrast
Phase contrast condensers and objective
lenses add considerable cost to a microscope,
and so phase contrast is often not used in teaching
labs except perhaps in classes in the health
professions and in some university undergraduate
programs. This is unfortunate since the images
obtainable in phase contrast mode can be very
dramatic.
To use phase contrast the light
path must be aligned. An element in the condenser
is aligned with an element in a specialized phase
contrast lens. This usually involves sliding
a component into the light path or rotating a
condenser turret. The elements are either lined
up in a fixed position or are adjusted by the
observer until the phase effect is optimized.
Generally, more light is needed for phase contrast
than for corresponding bright field viewing,
since the technique is based on a diminishment
of brightness of most objects.