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Bonnie Bartel |
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Publications (while at Rice, at Whitehead/MIT, at Bethel) Invited Lectures Teaching 1996-present (at Rice University) Peroxisome-associated matrix protein degradation in Arabidopsis. Disruption of ArabidopsisCHY1 reveals an important role of metabolic status in plant cold stress signaling. Criteria for annotation of plant microRNAs. Arabidopsis iba response5 (ibr5) suppressors separate responses to various hormones. Cell signaling and gene regulation. Editorial overview. Identification and characterization of Arabidopsis indole-3-butyric acid response mutants defective in novel peroxisomal enzymes. A new path to auxin. The IBR5 phosphatase promotes Arabidopsis auxin responses through a novel mechanism distinct from TIR1-mediated repressor degradation. Trinorlupeol: a major nonsterol triterpenoid in Arabidopsis. Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases. Arabidopsis thaliana SQUALENE EPOXIDASE 1 is essential for root and seed development. Mutation of E1-CONJUGATING ENZYME-RELATED1 decreases RELATED TO UBIQUITIN conjugation and alters auxin response and development. IBR3, a novel peroxisomal acyl-CoA dehydrogenase-like protein required for indole-3-butyric acid response. An Arabidopsis basic helix-loop-helix leucine zipper protein modulates metal homeostasis and auxin conjugate responsiveness. Biosynthetic diversity in plant triterpene cyclization. MicroRNAs and their regulatory roles in plants. Identification and functional characterization of Arabidopsis PEROXIN4 and the interacting protein PEROXIN22. A receptor for auxin. MicroRNAs directing siRNA biogenesis. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Auxin: regulation, action, and interaction. An auxin transport independent pathway is involved in phosphate stress-induced root architectural alterations in Arabidopsis. Identification of BIG as a mediator of auxin in pericycle cell activation. Mutations in Arabidopsis thaliana acyl-CoA oxidase genes reveal overlapping and distinct roles in b-oxidation. The Arabidopsis peroxisomal targeting
signal type 2 receptor PEX7 is necessary for peroxisome function
and dependent on PEX5. MicroRNA
regulation of gene expression in plants. MicroRNA
regulation of NAC-domain targets is required for proper formation
and separation of adjacent embryonic, vegetative, and floral organs. A
family of auxin-conjugate hydrolases that contribute to free indole-3-acetic
acid levels during Arabidopsis germination. IAR4,
a gene required for auxin conjugate sensitivity in Arabidopsis,
encodes a pyruvate dehydrogenase E1a homolog. Weed power, Translating Arabidopsis. An
Arabidopsis indole-3-butyric acid-response mutant defective
in PEROXIN6, an apparent ATPase implicated in peroxisomal function. IBR5,
a dual-specificity phosphatase-like protein modulating auxin and
abscisic acid responsiveness in Arabidopsis. ILR2,
a novel gene involved in IAA conjugate sensitivity and metal transport
in Arabidopsis thaliana. MicroRNAs. At the root of plant development? A
uniform system for microRNA annotation. Seeing
red. Prediction
of plant microRNA targets. MicroRNAs
in plants Characterization
of a family of IAA-amino acid conjugate hydrolases from Arabidopsis The
Arabidopsis pxa1 mutant is defective in an ATP-binding
cassette transporter-like protein required for peroxisomal fatty
acid b-oxidation. A
library of Arabidopsis 35S-cDNA lines for identifying novel mutants. chy1,
an Arabidopsis mutant with impaired b-oxidation, is defective
in a peroxisomal b-hydroxyisobutyryl-CoA hydrolase. A
gain-of-function mutation in IAA28 suppresses lateral root
development. Auxin
signaling: Derepression through regulated proteolysis Inputs
to the active indole-3-acetic acid pool: de novo synthesis,
conjugate hydrolysis, and indole-3-butyric acid b-oxidation. Genetic
analysis of indole-3-butyric acid responses in Arabidopsis thaliana reveals four mutant classes. FKF1,
a clock-controlled gene that regulates the transition to flowering
in Arabidopsis. Cloning
and characterization of IAR1, a gene required for auxin conjugate
sensitivity in Arabidopsis. IAR3 encodes an auxin conjugate hydrolase from Arabidopsis. Redundancy
as a way of life - IAA metabolism. Cloning
and characterization of the Arabidopsis thaliana lupeol synthase
gene. Arabidopsis
mutants resistant to the auxin effects of indole-3-acetonitrile
are defective in the nitrilase encoded by the NIT1 gene. Auxin
biosynthesis. Nucleotide
sequence of a pathogen-induced nitrilase gene from Arabidopsis
thaliana: Nit2 (Accession No. U47114). Nucleotide
sequence of the Arabidopsis thaliana Nitrilase 1 gene (Accession
No. U38845).
1988-1995 (at the Whitehead Institute and MIT) (back to top) ILR1,
an amidohydrolase that releases active indole-3-acetic acid from
conjugates. Differential
regulation of an auxin-producing nitrilase gene family in Arabidopsis
thaliana. Molecular
cloning, characterization, and overexpression of ERG7, the
Saccharomyces cerevisiae gene encoding lanosterol synthase. Isolation
of an Arabidopsis thaliana gene encoding cycloartenol synthase
by functional expression in a yeast mutant lacking lanosterol synthase
by the use of a chromatographic screen. Ubiquitin
as a degradation signal. Molecular
genetic analysis of Arabidopsis tryptophan synthase b. The
N-end rule in yeast is mediated by the UBC2(RAD6) ubiquitin-conjugating
enzyme. The
recognition component of the N-end rule pathway. Synthesis
of ribosomal proteins as ubiquitin fusions. The
tails of ubiquitin precursors are ribosomal proteins whose fusion
to ubiquitin facilitates ribosome biogenesis. Hypersensitivity
to heavy water: A new conditional phenotype. Molecular
genetics of the ubiquitin system. Genetic
analysis of yeast ubiquitin-hybrid genes.
1986 (at Bethel College) (back to top) Behavior
and brain neurotransmitters: Correlations in different strains
of mice.
Invited Lectures (1995-present) (back to top) gBiogenesis and functions of plant peroxisomes,h Buenos Aires Plant Biology Lectures, Universidad de Buenos Aires, Buenos Aires, Argentina, October 28, 2008 gUsing genetic modifiers to elucidate auxin signaling,h Buenos Aires Plant Biology Lectures, Universidad de Buenos Aires, Buenos Aires, Argentina, October 27, 2008 gUsing Arabidopsis to find new roles for peroxisomes and peroxins,h Department of Plant Biology, Cornell University, Ithaca, NY, September 26, 2008 gTurnover peroxisomal matrix proteins,h Plant Molecular Biology Gordon Conference, Holderness School, Holderness, NH, July 15, 2008 gUsing Arabidopsis to find new roles for peroxisomes and peroxins,h The North Carolina Plant Molecular Biology Consortium seminar series, North Carolina Biotechnology Center,Research Triangle Park, NC, March 10, 2008 gInsights into auxin signaling through analysis of genetic modifiers of the Arabidopsis ibr5 phosphatase mutant,h Keystone Symposium on Plant Hormones and Signaling, Keystone, CO, February 13, 2008 gTargets and functions of plant microRNAs,h The Academy of Medicine, Engineering and Science of Texas, 2008 Annual Conference, Houston, TX, January 10, 2008 gUsing Arabidopsis to find new roles for peroxisomes and peroxins,h University of Texas at San Antonio, TX, November 12, 2007 gUsing Arabidopsis to find new roles for peroxisomes and peroxins,h Interdisciplinary Plant Group Seminar Series, University of Missouri- Columbia, MO, October 29, 2007 gGenetics of auxin regulation in Arabidopsis,h 19th International Conference on Plant Growth Substances, Puerto Vallarta, Mexico, July 21-25th, 2007 gUsing Arabidopsis to find new roles for peroxins and peroxisomes,h 18th International Conference on Arabidopsis Research, Beijing, China, June 21, 2007 gUsing Arabidopsis to find new roles for peroxins and peroxisomes,h Department of Plant Biology, Carnegie Institution, Stanford, CA, May 4, 2007 gUsing Arabidopsis to find new roles for peroxins,h Plant BioNet Seminar, Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK, March 9, 2007 gUsing Arabidopsis to find new roles for peroxins,h The Samuel Roberts Noble Foundation, Plant Biology Seminar Series, Ardmore, OK, March 8, 2007 gFrom reading to research | introducing undergraduates to research from the outside in,h Howard Hughes Medical Institute Society of Professors Meeting, Chevy Chase, MD, March 3, 2007 gUsing Arabidopsis to find new roles for peroxins,h Institute of Biological Chemistry, Washington State University, Pullman, WA, February 7, 2007 gTargets and functions of plant microRNAs,h Department of Biology and Biochemistry, University of Houston, Houston, TX, November 29, 2006 gUsing Arabidopsis to find new roles for peroxins,h Institute for Integrative Genome Biology, University of California, Riverside, November 9, 2006 gGenetic analysis of peroxisome functions in Arabidopsis,h 17th International Symposium on Plant Lipids, East Lansing, MI, July 20, 2006 gFrom reading to research | introducing undergraduates to research from the outside in,h Howard Hughes Medical Institute Professors Meeting, Chevy Chase, MD, June 9, 2006 "Biogenesis and functions of plant peroxisomes," Distinguished Seminar Speaker Series, Plant Molecular Biology and Biotechnology Program, Ohio State University, Columbus, OH, March 30, 2006 "Targets and functions of plant microRNAs," Department of Microbiology and Molecular Genetics, University of Vermont, Burlington, VT, March 8, 2006 "Targets and functions of plant microRNAs," Pioneer Hi-Bred, Wilmington, DE, January 31, 2006 "Targets and functions of plant microRNAs," 45nd American Society of Cell Biology Annual Meeting, San Francisco, CA, December 14, 2005 "Auxin regulation in Arabidopsis: metabolism and microRNAs," Biotechnology/Life Sciences Seminar Series, University of Nebraska, Lincoln, NE, November 16, 2005 "Biogenesis and functions of plant peroxisomes," Department of Botany, University of Toronto, Toronto, Ontario, October 28, 2005 "Targets and functions of microRNAs in plants," 2005 Gairdner Foundation Symposium, The New World of RNA, Toronto, Ontario, October 28, 2005 "Genetics of auxin regulation in Arabidopsis," Symposium on Auxins and Cytokinins in Plant Development, Prague, The Czech Republic, July 7-12, 2005 "Targets and functions of plant microRNAs," 22nd Annual Department of Biochemistry and Cell Biology Symposium: "MicroRNAs and Gene Silencing," Stony Brook, NY, May 23, 2005 "Targets and functions of plant microRNAs," Distinguished Guest Lecture, 27th Annual Department of Molecular and Cellular Biology Graduate Student Symposium, Baylor College of Medicine, Houston, TX, April 29, 2005 "Targets and functions of plant microRNAs," Annual meeting of the Genetics Society of Canada, Banff, Alberta, March 17, 2005 "Regulation and action of the plant growth hormone auxin," Pennsylvania State University, State College, PA, November 15, 2004 "Targets and functions of plant microRNAs," Annual Symposium of the Jane Coffin Childs Memorial Fund for Medical Research, Lakeville, CT, October 23, 2004 "Genetic approaches to auxin regulation," Plenary session on "Hormone metabolism," 18th International Conference on Plant Growth Substances, Canberra, Australia, September 21, 2004. "MicroRNA regulation of lateral organ separation in plants" Banbury Conference on RNAi-Related Processes in Plants, Cold Spring Harbor Laboratory, NY, August 17, 2004 "Regulation
and action of the plant growth hormone auxin," Max Planck Institute
for Plant Breeding Research, Cologne, Germany, July 7, 2004 "Targets and functions of plant microRNAs," Institute of Cellular and Molecular Biology, University of Texas, Austin, TX, December 11, 2003 "Targets and functions of plant microRNAs," Invited speaker, Plant Genetics 2003: Mechanisms of Genetic Variation, Snowbird, UT, October 24, 2003 "Targets and functions of plant microRNAs," Invited speaker, 62nd Annual Meeting of the Society for Developmental Biology, Boston, MA, August 2, 2003 "Regulation and action of the plant growth hormone auxin," Plant Biology Graduate Group, University of California, Davis, CA, May 16, 2003 "Target prediction and function of microRNAs in plants," Molecular and Cellular Biology Seminar Series, University of California, Davis, CA, May 15, 2003 "Target prediction and function of plant microRNAs," The Plant Center Symposium, University of Georgia, Athens, GA, May 12, 2003 "Regulation and action of the plant growth hormone auxin," Department of Biology, University of Washington, Seattle, WA, April 2, 2003 "Target prediction and function of microRNAs in plants," Department of Biology, University of Washington, Seattle, WA, April 1, 2003 "Regulation and action of the plant growth hormone auxin," Department of Biology, University of North Carolina, Chapel Hill, NC, March 17, 2003 "Target prediction and function of microRNAs in Arabidopsis," Department of Cell Biology, University of Texas Southwestern Medical School, Dallas, TX, February 11, 2003 "MicroRNAs in plants," Invited speaker, Biological Sciences Department, University of North Texas, Denton, TX, November 15, 2002 "MicroRNAs in plants," Keynote address, Plant Molecular Genetics Institute Retreat, University of Minnesota, Saint Paul, MN, November 2, 2002 "Genetics of auxin regulation in Arabidopsis," Plant Biological Sciences Colloquium Series, University of Minnesota, Saint Paul, MN, November 1, 2002 "MicroRNAs in plants," PresidentiLs Symposium, Plant Biology 2002, Annual meeting of the American Society of Plant Biologists, Denver, CO, August 7, 2002 "Regulation and action of the plant growth hormone auxin" Plant Molecular Biology Gordon Research Conference , Holderness School, NH, July 8, 2002 "Regulation and action of the plant growth hormone auxin" University of Missouri, Columbia, MO, April 1, 2002 "Regulation and action of the plant growth hormone auxin" Salk Institute for Biological Studies, La Jolla, CA, March 7, 2002 "Regulation and action of the plant growth hormone auxin" DOE-Plant Research Laboratory Seminar Series, Michigan State University, East Lansing, MI, February 13, 2002 "Regulation and action of the plant growth hormone auxin" Department of Biochemistry and Cell Biology, Rice University, Houston, TX, October 8, 2001 "Genomics approaches to understanding auxin metabolism and response in Arabidopsis," Invited speaker, 17th International Conference on Plant Growth Substances, Brno, Czech Republic, July 6, 2001. "Genetic analysis of auxin regulation in Arabidopsis," Genetics Seminar Series, Texas A&M University, College Station, TX, March 22, 2001 "Experimenting with food," Convocation Address, Bethel College, North Newton, KS, Feb. 26, 2001 "Genetic analysis of auxin regulation in Arabidopsis," University of Texas, Austin, TX, October 10, 2000 "Genetics of auxin regulation," Cold Spring Harbor Course on Arabidopsis Molecular Genetics, Cold Spring Harbor Laboratory, NY, July 18, 2000 "Molecular genetics of IAA and IBA metabolism and response in Arabidopsis thaliana," EMBO Workshop on Auxin, Calcatoggio, Corsica, May 13-18, 2000 "Genetic analysis of auxin regulation in Arabidopsis," Department of Plant and Microbial Biology Seminar Series, University of California, Berkeley, October 4, 1999 "Genetic analysis of auxin regulation in Arabidopsis," Interdisciplinary Plant Sciences Seminar Series, University of Arizona, Tucson, AZ, April 5, 1999 "Genetic analysis of auxin metabolism," 9th International Conference on Arabidopsis Research, Madison, WI, June 25, 1998 "Genetics of auxin regulation in Arabidopsis," Merck/AAAS Lecture Series, Franklin & Marshall College, Lancaster, PA, April 6, 1998 "Genetics of auxin regulation in Arabidopsis," Plant Physiology and Plant Biotechnology Seminar Series, Texas A&M University, College Station, TX, February 13, 1997 "Genetic analysis of auxin deconjugation in Arabidopsis," Plant Molecular Biology Gordon Conference, New Hampton, NH, July 21-25, 1996 "Indole-3-acetic acid deconjugation in Arabidopsis thaliana," 15th International Conference on Plant Growth Substances, Minneapolis, MN, July 14-18, 1995 "Auxin deconjugation in Arabidopsis," Keystone Symposium on Signal Transduction in Plants, Hilton Head, SC, March 29-April 4, 1995
Teaching (back to top)
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