Course Text Notes for BIOE 464 Extracellular Matrix (Grande-Allen)
Jane Grande-Allen, Assistant Professor, Bioengineering , grande@rice.edu , ext 3704

1. Chapter 1. Introduction to Cells , in Essential Cell Biology 2 nd Edition , Alberts B, Bray D, Hopkin K, Johnson A, Lewis J, Raff M, Roberts K, Walter P, Garland Science Publishing, New York, 2003, pp. 1-38.
2. Banes AJ, Wall M, Garvin J, Archambault J, Cytomechanics: Signaling of Mechanical Load in Connective Tissue Cells and Its Role in Tissue Engineering , in Functional Tissue Engineering, Guila F, Butler DL, Goldstein SA, Mooney DJ, Springer-Verlag , New York , 2003, pp. 318-334.
3. Chiquet M, Matthisson M, Kock M, Tannheimer M, Chiquet-Ehrismann R, Regulation of extracellular matrix synthesis by mechanical stress , Biochem Cell Biol , vol 74, pp 737-744, 1996.
4. Chapter 16. Cell Communication , in Essential Cell Biology 2 nd Edition , Alberts B, Bray D, Hopkin K, Johnson A, Lewis J, Raff M, Roberts K, Walter P, Garland Science Publishing, New York, 2003, pp. 533-571
5. Chapter 19. Cell Junctions, Cell Adhesion, and the Extracellular Matrix , in Molecular Biology of the Cell 4 th Edition , Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P, Garland Science Publishing, New York, 2002, pp. 1065-1125.
6. Chapter 17. Cytoskeleton , in Essential Cell Biology 2 nd Edition , Alberts B, Bray D, Hopkin K, Johnson A, Lewis J, Raff M, Roberts K, Walter P, Garland Science Publishing, New York, 2003, pp. 574-609.
7. Olsen BR, Ninomiya Y, Collagens , in Guidebook to the Extracellular Matrix, Anchor, and Adhesion Proteins 2 nd Edition , Kreis T, Vale R, Oxford University Press, 1999, pp. 380-408.
8. Ottani V, Martini D, Frachi M, Ruggeri A, Raspanti M, Hierarchical structures in fibrillar collagens , Micron vol 33, pp 587-596, 2002.
9. Ottani V, Raspanti M, Ruggeri A, Collagen structure and functional implications , Micron vol 32, pp 251-260, 2001.
10. Burr DB, The contribution of the organic matrix to bone's material properties , Bone , vol 31(1), 2002, pp. 8-11.
11. Mecham RP, Davis ED, Elastic Fiber Structure and Assembly , in Extracellular Matrix Assembly and Structure , Yurchenco PD, Birk DE, Mechan RP, Academic Press, San Diego, 1994, pp. 281-314.
12. Debelle L, Tamburro AM, Elastin: molecular description and function , International Journal of Biochemistry and Cell Biology , vol 31, 1999, pp. 261-272.
13. Vogel KG, Glycosaminoglycans and Proteoglycans , in Extracellular Matrix Assembly and Structure , Yurchenco PD, Birk DE, Mechan RP, Academic Press, San Diego, 1994, pp. 243-279.
14. Lander AD, Proteoglycans , in Guidebook to the Extracellular Matrix, Anchor, and Adhesion Proteins 2 nd Edition , Kreis T, Vale R, Oxford University Press, 1999, pp. 351-356.
15. Pesciotta Peters DM, Mosher DM, Formation of fibronectin extracellular matrix , in Extracellular Matrix Assembly and Structure , Yurchenco PD, Birk DE, Mechan RP, Academic Press, San Diego, 1994, pp. 315-350.
16. Quondomatteo F, Assembly, stability and integrity of basement membranes in vivo , The Histochemical Journal , vol 34, pp. 369-381, 2002.
17. Chapter 22. Histology: The Lives and Deaths of Cells in Tissues , in Molecular Biology of the Cell 4 th Edition , Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P, Garland Science Publishing, New York, 2002, pp. 1259-1312.
18. Schoen FJ, Chapter 3.4. Tissues , in Biomaterials Science. An Introduction to Materials in Medicine , Ratner BD, Hoffman AS, Schoen FJ, Lemons JE, Academic Press, San Diego, 1996, pp. 147-164.
19. Chapter 1. Introduction; A Sketch of the History and Scope of the Field , and Chapter 2. The Meaning of the Constitutive Equation , in Biomechanics. Mechanical Properties of Living Tissues 2 nd Edition. Fung YC, Springer-Verlag , New York , 1993, pp. 1-66.
20. Sternlicht MD, Werb Z, Selected sections from the Guidebook to the Extracellular Matrix, Anchor, and Adhesion Proteins 2 nd Edition , Kreis T, Vale R, Oxford University Press, 1999.
    a. ECM proteinases , pp. 505-509
    b. Lysosomal proteinases , pp. 513-519
    c. Matrix metalloproteinases , pp. 519-524
    d. Tissue inhibitors of metalloproteinases (TIMPs) , pp. 539-542
    e. Neutrophil elastase and cathepsin G , pp. 543-545.
21. Stamenkovic I, Extracellular matrix remodeling: the role of matrix metalloproteinases , Journal of Pathology , vol 300, pp. 448-464, 2003.
22. Section C - Enzymes , in Instant Notes Biochemistry, 2 nd Edition , Hames BD, Hooper NM, Springer-Verlag, New York, 2000, pp. 69-95.
23. Chapter 1. Cell Injury, Adaptation, and Death (Mitchell RN, Cotran RS), Chapter 2. Acute and Chronic Inflammation (Mitchell RN, Cotran RS), and Chapter 3: Tissue Repair: Cell Regeneration and Fibrosis (Mitchell RN, Cotran RS), in Basic Pathology 7 th Edition , Kumar V, Cotran RS, Robbins SL, WB Saunders, Philadelphia , 2003, pp. 3-78.
24. Ooyama T, Sakamoto H, Elastase in the prevention of arterial ageing and the treatment of atherosclerosis , in The Molecular Biology and Pathology of Elastic Tissues, John Wiley & Sons, 1995, pp. 307-320.
25. Robert L, Labat-Robert J, Aging of connective tissues: from genetic to epigenetic mechanisms , Biogerontology vol 1, pp. 123-131, 2000.
26. Sames K, Glycosaminoglycans, proteoglycans, and aging , in Proteoglycans , Jollès P, Birkhäuser Verlag, Basel , 1994, pp. 243-274.