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Publications at Rice University (59)

  • 72. N. C. Wickremasinghe, V. A. Kumar, J. D. Hartgerink "Two Step Self-assembly of Liposome-Multidomain Peptide Nanofiber Hydrogel for Time-Controlled Release" Biomacromolecules, in press.

  • 71. J. S. Colombo, A. N. Moore, J. D. Hartgerink, R. N. D'Souza "Scaffolds to Control Inflammation and Facilitate Dental Pulp Regeneration" J. Endodontics 40, 4 S6-S12 (2014).

  • 17. A. A. Jalan, K. A. Jochim, J. D. Hartgerink "Rational Design of a Non-canonical "Sticky-ended" ABC-Collagen Triple Helix" J. Am. Chem. Soc. 136, 7535-7538 (2014).

  • 69. M. K. Kang, J. Colombo, R.N. D'Souza, J. D. Hartgerink "Sequence effects of self-assembling MultiDomain Peptide Hydrogels on encapsulated SHED cells" Biomacromolecules, 15, 2004-2011 (2014).

  • 68. V. A. Kumar, N. L. Taylor, A. A. Jalan, L. K. Hwang, B. K. Wang, J. D. Hartgerink "A Novel Synthetic Collagen Mimic for Hemostasis" Biomacromolecules 15, 1484-1490 (2014).


  • 67. A. A. Jalan, J. D. Hartgerink "Unraveling pairwise interactions in collagen and the design of heterotrimeric helices" Curr. Opin. Chem. Biol. 17, 6, 960-967 (2013).

  • 66. A. A. Jalan, B. Demeler, J. D. Hartgerink "Hydroxyproline-Free Single Composition ABC Collagen Heterotrimer" J. Am. Chem. Soc. 135, 6014-6017 (2013).

  • 65. E. L. Bakota, O. Sensoy, B. Ozgur, M. Sayar, and J. D. Hartgerink "Self-Assembling Multidomain Peptide Fibers with Aromatic Cores" Biomacromolecules 14, 1370-1378 (2013).

  • 64. A. A. Jalan and J. D. Hartgerink "Simultaneous Control of Composition and Register of an AAB-type Collagen Heterotrimer" Biomacromolecules 14, 179-185 (2013).


  • 63. J. A. Fallas and J. D. Hartgerink "Computational Design of Self-Assembling Register-Specific Collagen Heterotrimers" Nat. Comm., 3, 1087 (2012).

  • 62. Fang Wei, J. Fallas and J. D. Hartgerink "Sequence Position and Side Chain Length Dependence of Charge Pair Interactions in Collagen Triple Helices" Macromol. Rapid. Comm. 33, (17), 1445-1452 (2012).

  • 61. J. A. Fallas, J. Dong, Y. J. Tao and J. D. Hartgerink "Structural insights into charge pair interactions in triple helical collagen-like proteins" J. Biol. Chem. 287 8039-47 (2012).

  • 60. J. A. Fallas, M. A. Lee, Abhishek A. Jalan, and J. D. Hartgerink "Rational Design of Single-Composition ABC Collagen Heterotrimers" J. Am. Chem. Soc.,134, 1430-1433 (2012).

  • 59. K. M. Galler, J. D. Hartgerink, A. C. Cavender, G. Schmalz and R. N. D'Souza "A Customized Self-Assembling Peptide Hydrogel for Dental Pulp Tissue Engineering" Tissue Eng. A13, 176-184 (2012).


  • 58. K. M. Galler, R. N. D'Souza, M. Federlin, A. C. Cavender, J. D. Hartgerink, S. Hecker, G. Schmalz "Dentin Conditioning Codetermines Cell Fate in Regenerative Endodontics" J. Endo. 37, 11, 1536-1541 (2011).

  • 57. L. E. R. O'Leary, J. A. Fallas, E. L. Bakota, M. K. Kang and J. D. Hartgerink "Multi-hierarchical self-assembly of a collagen mimetic peptide from triple helix to nanofiber and hydrogel" Nature Chem. 3, 821-828 (2011).

  • 56. W. C. Pomerantz, V. M. Yuwono, R. Drake, J. D. Hartgerink, N. L. Abbott and S. H. Gellman "Lyotropic Liquid Crystals Formed from ACHC-Rich beta-Peptides" J. Am. Chem. Soc. 133, 13604-13613 (2011).

  • 55. K.M. Galler, R.N. D'Souza, J.D. Hartgerink, and G Schmalz "Scaffolds for Dental Pulp Tissue Engineering" Adv. Dent. Res. 23, 333-339 (2011).

  • 54. E. L. Bakota, Y. Wang, F. Danesh, and J. D. Hartgerink "Injectable Peptide Nanofiber Hydrogel as Delivery Agent for Stem Cell Secretome"Biomacromolecules, 12, 1651-1657 (2011).

  • 53. Y. Wang, E. Bakota, B. H. J. Chang, M. Entman, J. D. Hartgerink, and F. R. Danesh "Peptide Nanofibers Preconditioned with Stem Cell Secretome Are Renoprotective" J. Am. Soc. Nephrology, 22, 704-711 (2011).

  • 52. E. L. Bakota, L. Aulisa, K. M. Galler, and J. D. Hartgerink "Enzymatic Cross-Linking of a Nanofibrous Peptide Hydrogel" Biomacromolecules, 12, 82-87 (2011).

  • 51. L. E. R. O'Leary, J. A. Fallas, and J. D. Hartgerink "Positive and Negative Design Leads to Compositional Control in AAB Collagen Heterotrimers" J. Am. Chem. Soc., 113, 5432-5443 (2011).


  • 50. J. A. Fallas, L. E. R. O'Leary and J. D. Hartgerink "Synthetic collagen mimics: self-assembly of homotrimers, heterotrimers and higher order structures" Chem. Soc. Rev. 39, 3510-3527 (2010).

  • 49. K. M. Galler, R. N. D'Souza and J. D. Hartgerink "Biomaterials and their potential applications for dental tissue engineering" J. Mat. Chem. 20, 8730-8746 (2010).

  • 48. K. M. Galler, L. Aulisa, K. R. Regan, R. N. D'Souza and J. D. Hartgerink "Self-assembling Multidomain Peptide Hydrogels: Designed Susceptibility to Enzymatic Cleavage Allows Enhanced Cell Migration and Spreading"J. Am. Chem. Soc., 132, 3217-3223 (2010).

  • 47. L. E. Russell, J. A. Fallas and J. D. Hartgerink "Selective Assembly of a High Stability AAB Collagen Heterotrimer"J. Am. Chem. Soc., 132, 3242-3243 (2010).


  • 46. L. Aulisa, H. Dong and J. D. Hartgerink "Self-Assembly of Multidomain Peptides: Sequence Variation Allows Control over Cross-Linking and Viscoelasticity" Biomacromolecules, 10, 2694-2698 (2009).

  • 45. J. A. Fallas, V. Gauba and J. D. Hartgerink "Solution structure of an ABC collagen heterotrimer reveals a single-register helix stabilized by electrostatic interactions" J. Biol. Chem., 284 26851-26859 (2009).

  • 44. D. Zhang, O. Neumann, H. Wang, V. M. Yuwono, A. Barhoumi, M. Perham, J. D. Hartgerink, P. Wittung-Stafshede and N. J. Halas "Gold Nanoparticles Can Induce the Formation of Protein-based Aggregates at Physiological pH" Nano Lett. 9, 666-671 (2009).

  • 43. E. L. Bakota, L. Aulisa, D. A. Tsyboulski, R. B. Weisman and J. D. Hartgerink " Multidomain Peptides as Single-Walled Carbon Nanotube Surfactants in Cell Culture" Biomacromolecules, 8 2201-2206 (2009).

  • 42. L. Aulisa, N. Forraz, C. McGuckin, J. D. Hartgerink "Inhibition of Cancer Cell Proliferation by Designed Peptide-Amphiphiles" Acta Biomaterialia 5, 842-853 (2009).


  • 41. C. L. Pizzey, W. C. Pomerantz, B.-J. Sung, V. M. Yuwono, S. H. Gellman, J. D. Hartgerink, A. Yethiraj, and N. L. Abbott "Characterization of nanoŞbers formed by self-assembly of beta-peptide oligomers using small angle x-ray scattering" J. Chem. Phys. 129, 095103 (2008).

  • 40. D. Tsyboulski, E. Bakota, L. Witus, J-D. Rocha, J. D. Hartgerink, B. R. Weisman "Self-Assembling Peptide Coatings Designed for Highly Luminescent Suspensions of Single-Walled Carbon Nanotubes" J. Am. Chem. Soc. 130, 17134-17140 (2008).

  • 39. H. Dong, S. E. Paramonov and J. D. Hartgerink "Self-assembly of alpha-helica coiled-coil nanofibers" J. Am. Chem. Soc. 130, 13691-13695 (2008).

  • 38. K. M. Galler, A. Cavender, V. Yuwono, H. Dong, S. Shi, G. Schmalz, J. D. Hartgerink and R. N. D'Souza "Self-Assembling Peptide Amphiphile Nanofibers as a Scaffold for Dental Stem Cells" Tissue Eng. 14, 2051-2058 (2008).

  • 37. F. Wei, D. Zhang, N. J. Halas and J. D. Hartgerink "Aromatic amino acids provide characteristic motifs in the Raman and SERS spectroscopy of Peptides" J. Phys. Chem. 113, 9158-9164 (2008).

  • 36. V. Gauba and J. D. Hartgerink "Synthetic Collagen Heterotrimers: Structural Mimics of Wild Type and Mutant Collagen Type I" J. Am. Chem. Soc. 130 7509-7515 (2008).

  • 35. H-W. Jun, S. E. Paramonov, H. Dong, N. Forraz, C. McGuckin, and J. D. Hartgerink "Tuning the mechanical and bioresponsive properties of peptide-amphiphile nanofiber networks" J. Biomater. Sci. Polymer Edn. 19, 665-676 (2008).

  • 34. W. C. Pomerantz, V. M. Yuwono, C. L. Pizzey, J. D. Hartgerink, N. L. Abbott, S. H. Gellman, "Nanofibers and Lyotropic Liquid Crystals from a Class of Self-Assembling Beta-Peptides" Angew. Chem. Int. Ed. 47, 1241-1244 (2008).


  • 33. V. Gauba and J. D. Hartgerink "Surprisingly High Stability of Collagen ABC Heterotrimer: Evaluation of Side Chain Charge Pairs" J. Am. Chem. Soc. 129, 15034-15041 (2007).

  • 32. H. Dong, S. E. Paramonov, L. Aulisa, E. L. Bakota, and J. D. Hartgerink "Self-Assembly of Multi-Domain Peptides: Balancing Molecular Frustration Controls Conformation and Nanostructure" J. Am. Chem. Soc. 129, 12468-12472 (2007).

  • 31. M. B. Murphy, J. D. Hartgerink, A. Goepferich, and A. G. Mikos, "Synthesis and In Vitro Hydroxyapatite Binding of Peptides Conjugated to Calcium-Binding Moieties" Biomacromol., 8, 2237-2243 (2007).

  • 30. Virany M. Yuwono and Jeffrey D. Hartgerink "Peptide Amphiphile Nanofibers Template and Catalyze Silica Nanotube Formation" Langmuir 23, 5033-5038 (2007).

  • 29. L. S. Witus, J.-D. R. Rocha, V. M. Yuwono, S. E. Paramonov, R. B. Weisman and J. D. Hartgerink "Peptides that non-covalently functionalize single-walled carbon nanotubes to give controlled solubility characteristics" J. Mater. Chem. 17, 1909-1915 (2007).

  • 28. V. Gauba, J. D. Hartgerink "Self-assembled Heterotrimeric Collagen Triple Helices Directed Through Electrostatic Interactions" J. Am. Chem. Soc. 129, 2683-2690 (2007).

  • 27. H. Dong, J. D. Hartgerink "The role of hydrophobic clusters in the stability of alpha-helical coiled coils and their conversion to amyloid-like beta-sheets" Biomacromol. 8, 617-623 (2007).

  • 26. V. Gauba and J. D. Hartgerink "Recent Advances in Supramolecular Polymers" Physical Properties of Polymers Handbook, 2nd Ed. James E. Mark, Ed. Springer, 715-722 (2007).

  • 25. J. Yang, L. B. Alemany, J. Driver, J. D. Hartgerink, A. R. Barron "Fullerene-derivatized amino acids: Synthesis, characterization, antioxidant properties, and solid-phase peptide synthesis" Chem. Eur. J., 13, 2530-2545 (2007).


  • 24. J. D. Hartgerink "Nanomedicine: New material stops bleeding in a hurry" Nature Nanotech. 1, 3, 166-167 (2006).

  • 23. C. McGuckin, N. Forraz, M-O. Baradez, C. Basford, A. M. Dickinson, S. Navran, J. D. Hartgerink "Embryonic-like stem cells from umbilical cord blood and potential for neural modeling" Acta Neurobiol. Exp., 66 321-329 (2006).

  • 22. C. S. Levin, B. G. Janesko, R. Bardhan, G. E. Scuseria, J. D. Hartgerink, N. J. Halas "Chain-Length-Dependent Vibrational Resonances in Alkanethiol Self-Assembled Monolayers Observed on Plasmonic Nanoparticle Substrates" Nanoletters 6, 2617-2621 (2006).

  • 21. S. E. Paramonov, H-W. Jun "Self-assembly of peptide-amphiphile nanofibers: the roles of hydrogen bonding and amphiphilic packing" J. Am. Chem. Soc. 128, 7291-7298 (2006).

  • 20. H. Dong, J. D. Hartgerink "Short Homodimeric and Heterodimeric Coiled Coils" Biomacromol., 7, 691-695 (2006).

  • 19. H-W Jun, S. E. Paramonov, J. D. Hartgerink "Biomimetic Self-assembled Nanofibers" Soft Matter, 2, 177-181 (2006).

  • 18. M. J. Pender, L. A. Sowards, J. D. Hartgerink, M. O. Stone, R. R. Naik "Peptide-Mediated Formation of Single-Wall Carbon Nanotube Composites" Nanoletters 6, 40-44 (2006).

  • 17. S. E. Paramonov, H-W. Jun, J. D. Hartgerink "Modulation of Peptide-Amphiphile Nanofibers via Phospholipid Incusions" Biomacromol. 7, 24-26 (2006).


  • 16. H-W Jun, V. Yuwono, S. E. Paramonov, J. D. Hartgerink "Enzyme Mediated Degradation of Peptide-Amphiphile Nanofiber Networks" Adv. Mater. 17, 2612-2617 (2005).

  • 15. S. E. Paramonov, V. Gauba, J. D. Hartgerink "Synthesis of Collagen-like Peptide Polymers via Native Chemical Ligation" Macromol. 38, 7555-7561 (2005).

  • 14. S. E. Paramonov, J. D. Hartgerink "The structure of collagen and nanostructured collagen mimics in tissue engineering" Nanofabrication Towards Biomedical Applications, C. Kumar, J. Hormes, C. Leuschner, Eds. Wiley, 95-117 (2005).

  • 13. J. D. Hartgerink. "Covalent Capture: A Natural Compliment to Self-Assembly" Cur. Op. Chem. Biol. 8, 604-609 (2004).

at Northwestern University (6)
at The Scripps Research Institute (6)
  • 6. J. D. Hartgerink, T. D. Clark and M. R. Ghadiri, "Peptide Nanotubes and Beyond" Chem. Eur. J. 1998, 4, No. 8, 1367-1372.

  • 5. H. S. Kim, J. D. Hartgerink and M. R. Ghadiri, "Oriented Self-Assembly of Cyclic Peptide Nanotubes", J. Am. Chem. Soc. 1998, 120, 4417-4424.

  • 4. P. Kast, J. D. Hartgerink, M. Asif-Ullah and D. Hilvert, "Electrostatic Catalysis of the Claisen Rearrangement: Probing the Role of Glu78 in Bacillus subtilis Chorismate Mutase by Genetic Selection", J. Am. Chem. Soc. 1996, 118, 3069-3070.

  • 3. J. D. Hartgerink, J. R. Granja, R. A. Milligan and M. R. Ghadiri, "Self-Assembling Peptide Nanotubes", J. Am. Chem. Soc. 1996, 118, 43-50.

  • 2. J. D. Hartgerink and M. R. Ghadiri, "Peptide-Based Nanotubes (A New Class of Functional Biomaterials)", The Polymeric Materials Encyclopedia, J. Salamone, Ed.; CRC press: Boca Raton, Florida 1996; Vol. 7, p. 4888-4901.

  • 1. J. D. Hartgerink and M. R. Ghadiri, "Self Assembling Organic Nanotubes", New Macromol. Archit. Funct., M. Kamachi and A. Nakamura, Eds.; Springer: Berlin, Germany 1996; p 181-188.