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Dr. Lydia Kavraki

Robot Motion Planning

In robotics we are interested in motion planning with emphasis on high-dimensional systems, assembly planning, reasoning with sensing and control uncertainty, flexible object manipulation, physical modeling, probabilistic methods in robotics. The projects available include planning the paths of a robot with constraints, the use of physics-based simulators in motion planning and the development of web services that will allow the remote use of the tools developed in our laboratory.

Computer Assisted Drug Design

Designing effective drugs and novel functional materials requires modeling molecular interactions. The picture of molecular interactions is dynamic because of the flexibility of molecules. For instance, proteins undergo important functional motions that span a broad range of time scales. A first step towards a better understanding of molecular interactions is modeling protein flexibility at multiple resolutions. Our goal is to characterize multi-scale protein flexibility. We need computational methods to span a large range of time and length scales with inhomogeneous and hierarchical level of detail. We need a robust physicochemical formulation to characterize protein flexibility to a degree that redirects expensive experiments to well-defined goals. We have already developed methods that incorporate robotics algorithms with a statistical mechanics formulation to study the mobility of particular protein regions. The proposed project will further investigate robotics, computational geometry and graphics techniques for modeling the flexibility of protein molecules. Thi project also involves the development of a web-based tool.

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